PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574618.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 321aa    MW: 36069.9 Da    PI: 4.6704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12161204654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_012574618.1 161 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 204
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15158224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9161204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.47E-5162208No hitNo description
CDDcd048734.15E-4247288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELSQLGFLD ELLAPRKDTW NALSTTGLNE LLLPTCCYTF DSFDENLLNN PSLNPSFASF  60
STPLDHRFEC SYGTDATTPS YPFVDAFTVP EFDESAPLLP SMEDEAFGGF LGTESNKSFE  120
QTKINCKVEE HVNEIPVFNM GLCGEKKQKS KRVEGQPSKN LMAERRRRKR LNDRLSMLRS  180
IVPKISKMDR TSILGDTIDY MKELLERIGK LQEEVEDGTN QINLLGISKE LKPNEVMFDV  240
ERRDQDTRIS ICCATKPGLL LSTVNTLEAL GLEIHQCVIS SFNDFSLQAS CSEAAGQRNC  300
MNPEEIKQSL FRNAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4590361e-140CU459036.1 Medicago truncatula chromosome 5 clone mte1-64g13, COMPLETE SEQUENCE.
GenBankEU3066591e-140EU306659.1 Medicago truncatula zinc finger protein, GH1 protein, hydroxyproline-rich glycoprotein, and bHLH transcription factor genes, complete cds; LTR-retrotransposon, complete sequence; beta-D-xylosidase, glycine-rich protein, putative protein, ABC transporter, NORK, BRICK1, oligopeptidase A, serine-hydroxymethyltransferase, and MADS-box protein genes, complete cds; tRNA-Ile genes, complete sequence; lectin gene, complete cds; LTR-retrotransposon, complete sequence; lectin genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574618.10.0PREDICTED: transcription factor bHLH93-like isoform X2
SwissprotQ9LSL14e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A072UDL70.0A0A072UDL7_MEDTR; Transcription factor bHLH93
STRINGGLYMA01G02390.11e-176(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-80beta HLH protein 93